NetCDF
4.9.2
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In versions before 4.2, the Fortran netCDF library source was bundled with the C library source in one distribution. With more recent versions, the Fortran netCDF library has been split off into an independent source distribution, intended to be built as a separate library, after the C library is built and installed. This separation simplifies the building and use of the C and Fortran netCDF libraries and allows them to evolve independently.
More recently, building netcdf-fortran as an automated step in the netcdf-c build is now possible (for non-MSVC builds) by using new options at configure time, so if you haven't built and installed the netCDF-C library yet, you may want to try the new netCDF-C Fortran-bootstrap procedure.
In the example commands below, we assume use of a POSIX-standard shell, such as sh, bash, ksh, or zsh. If you are using csh instead, you will have to use the
setenv ENV_VARIABLE value
syntax to set environment variables instead of the
ENV_VARIABLE=value
syntax used in the examples. In either case, ${VAR}
is the value of the shell variable or environment variable VAR.
It will be easier to build the netCDF Fortran library if the C (and if needed, HDF5) libraries are built as shared libraries (the default), but you can also use static libraries, as described in a later section.
${NCDIR}/lib
and netCDF utilities such as ncdump are under ${NCDIR}/bin
. For example: NCDIR=/usr/local
CC=/usr/local/cc FC=/usr/local/fortran
export LD_LIBRARY_PATH=${NCDIR}/lib:${LD_LIBRARY_PATH}
NFDIR
to where you want to install netCDF Fortran, which can be the same location where the netCDF C was installed (default /usr/local), but not the source directory where you are building the software. Then, from the top-level source directory, run the configure script, using CPPFLAGS and LDFLAGS to specify where the netCDF C library was installed: NFDIR=/usr/local CPPFLAGS=-I${NCDIR}/include LDFLAGS=-L${NCDIR}/lib \ ./configure --prefix=${NFDIR}If you are cross-compiling, you should also include the configure option "--disable-fortran-type-check", as in:
CPPFLAGS=-I${NCDIR}/include LDFLAGS=-L${NCDIR}/lib \ ./configure --prefix=${NFDIR} --disable-fortran-type-checkTo see other configure options, run
configure --help
.make check
make installor
sudo make installIf you encounter problems, send the complete "config.log" file generated by running configure to suppo. rt-n etcdf @uni data. ucar .edu
If you can't build the C netCDF library as a shared library or if it has already been installed by someone else only as a static library (which means there are no libnetcdf.so files in the library directory where the netCDF C library was installed), then building and installing the Fortran netCDF libraries will be more complicated.
${NCDIR}
, the HDF5 library under ${H5DIR}
, and other needed libraries such as zlib and curl under ${ODIR}
. Some or all of these could be the same (for example /usr/local).${NFDIR}
specify where you want to install the netCDF Fortran library. This can be the same location where the netCDF C library is installed (default is /usr/local).CPPFLAGS="-I${NCDIR}/include -I${H5DIR}/include -I${ODIR}/include" \ LDFLAGS="-L${NCDIR}/lib -L${H5DIR}/lib -L${ODIR}/lib" \ LD_LIBRARY_PATH=${NCDIR}/lib:${H5DIR}/lib:${ODIR}/lib \ LIBS="-lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl" \ ./configure --disable-shared --prefix=${NCDIR}If you are cross-compiling, you should also include the configure option "--disable-fortran-type-check".
CC=mpicc FC=mpif90 F77=mpif77 CPPFLAGS=-I${NCDIR}/include \ LDFLAGS=-L${NCDIR}/lib ./configure --prefix=${NFDIR}You may have to use absolute path names for CC, F90, and F77 if configure can't find them. Finally, you may also need to set CFLAGS to indicate which Fortran compiler is wrapped by mpif90 nd mpif77. For example, if "mpif90 --show" indicates gfortran is being used, then set CFLAGS=-DgFortran, and similarly set CFLAGS=-DpgiFortran for Portland Group compilers.
If you encounter problems, send the complete "config.log" file generated by running configure to suppo. rt-n etcdf @uni data. ucar .edu
If you built the shared libraries, you can link with something like
fortran my_prog.f -o my_prog -I${NFDIR}/include -L${NFDIR}/lib -lnetcdff
to link your Fortran software with the installed netCDF Fortran and C libraries.
If you didn't install the shared libraries in a standard place, you may need to set LD_LIBRARY_PATH (or DYLD_LIBRARY_PATH for OSX) to include ${NFDIR}/lib
before running the resulting program. Alternatively, you may add ${NFDIR}/lib
to the LD_RUN_PATH environment variable before linking, or use the -Wl,-rpath -Wl,${NFDIR}/lib
linker flag, or have your system administrator add ${NFDIR}/lib
to ‘/etc/ld.so.conf’. See operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages.
If you built static libraries, you will need to use something like
fortran my_prog.f -o my_prog -I${NFDIR}/include \ -L${NCDIR}/lib -lnetcdff -lnetcdf \ -L${H5DIR}/lib -lhdf5_hl -lhdf5 -L${ODIR} -lz -lcurl -lm
to link Fortran software with the installed Fortran library and the libraries on which it depends.
A simpler alternative that should work for either shared or static libraries is to use the "nf-config" utility installed in ${NFDIR}/bin
:
fortran my_prog.f -o my_prog `nf-config --fflags --flibs`
or the more general "pkg-config" utility, if you have it:
fortran my_prog.f -o my_prog `pkg-config --cflags --libs netcdf-fortran`
For cross-compiles, the following environment variables can be used to override the default fortran/C type settings like this (in sh):
export NCBYTE_T="integer(selected_int_kind(2))" export NCSHORT_T="integer*2" export NF_INT1_T="integer(selected_int_kind(2))" export NF_INT2_T="integer*2" export NF_INT1_IS_C_SHORT=1 export NF_INT2_IS_C_SHORT=1 export NF_INT_IS_C_INT=1 export NF_REAL_IS_C_FLOAT=1 export NF_DOUBLEPRECISION_IS_C_DOUBLE=1
In this case you will need to run configure with –disable-fortran-compiler-check
and –disable-fortran-type-check
.
Variable | Usage | Description |
---|---|---|
CC | C compiler | If you don't specify this, the configure script will try to find a suitable C compiler. The default choice is gcc. If you wish to use a vendor compiler you must set CC to that compiler, and set other environment variables (as described below) to appropriate settings. |
FC | Fortran compiler (if any) | If you don't specify this, the configure script will try to find a suitable Fortran and Fortran 77 compiler. Use –disable-f90 to disable the netCDF Fortran 90 API, but build the netCDF Fortran 77 API. |
F77 | Fortran 77 compiler (if any) | Only specify this if your platform explicitly needs a different Fortran 77 compiler. Otherwise use FC to specify the Fortran compiler. If you don't specify this, the configure script will try to find a suitable Fortran compiler. For vendor compilers, make sure you're using the same vendor's Fortran 90 compiler. Using Fortran compilers from different vendors is not supported and may not work. |
CFLAGS | C compiler flags | "-O -g2", for example. |
CPPFLAGS | C preprocessor options | "-DNDEBUG" to omit assertion checks, for example. |
FCFLAGS | Fortran 90 compiler flags | "-O" or "-g", for example. These flags will be used for FORTRAN 90. If setting these you may also need to set FFLAGS for the FORTRAN 77 test programs. |
FFLAGS | Fortran 77 compiler flags | "-O" or "-g", for example. If you need to pass the same arguments to the FORTRAN 90 build, also set FCFLAGS. |
ARFLAGS, NMFLAGS, FPP, M4FLAGS, LIBS, FLIBS, FLDFLAGS | Miscellaneous | One or more of these may be needed for some platforms. Unless required, you should not set these environment variables, because that may interfere with the configure script. |