Class SequenceDS

    • Method Detail

      • getStructureIterator

        public StructureDataIterator getStructureIterator​(int bufferSize)
                                                   throws IOException
        Deprecated.
        Description copied from class: Structure
        Get an efficient iterator over all the data in the Structure. This is the efficient way to get all the data, it can be much faster than reading one record at a time, and is optimized for large datasets. This is accomplished by buffering bufferSize amount of data at once.
         Example:
        
          StructureDataIterator ii = structVariable.getStructureIterator(100 * 1000);
          while (ii.hasNext()) {
            StructureData sdata = ii.next();
          }
         
        Overrides:
        getStructureIterator in class Structure
        Parameters:
        bufferSize - size in bytes to buffer, set < 0 to use default size
        Returns:
        StructureDataIterator over type StructureData
        Throws:
        IOException - on read error
      • read

        public Array read​(Section section)
                   throws IOException
        Deprecated.
        Description copied from class: Variable
        Read a section of the data for this Variable from the netcdf file and return a memory resident Array. The Array has the same element type as the Variable, and the requested shape. Note that this does not do rank reduction, so the returned Array has the same rank as the Variable. Use Array.reduce() for rank reduction.

        If the Variable is a member of an array of Structures, this returns only the variable's data in the first Structure, so that the Array shape is the same as the Variable. To read the data in all structures, use ncfile.readSectionSpec().

        Note this only allows you to specify a subset of this variable. If the variable is nested in an array of structures and you want to subset that, use NetcdfFile.read(String sectionSpec, boolean flatten);

        Overrides:
        read in class Variable
        Parameters:
        section - list of Range specifying the section of data to read. Must be null or same rank as variable. If list is null, assume all data. Each Range corresponds to a Dimension. If the Range object is null, it means use the entire dimension.
        Returns:
        the requested data in a memory-resident Array
        Throws:
        IOException - if error
      • read

        public Array read()
                   throws IOException
        Deprecated.
        Description copied from class: Variable
        Read all the data for this Variable and return a memory resident Array. The Array has the same element type and shape as the Variable.

        If the Variable is a member of an array of Structures, this returns only the variable's data in the first Structure, so that the Array shape is the same as the Variable. To read the data in all structures, use ncfile.readSection().

        Overrides:
        read in class Variable
        Returns:
        the requested data in a memory-resident Array.
        Throws:
        IOException