ucar.nc2.dt.grid

Class GridCoordSys

java.lang.Object

ucar.nc2.dataset.CoordinateSystem

ucar.nc2.dt.grid.GridCoordSys

All Implemented Interfaces:

GridCoordSystem

public class GridCoordSys
extends CoordinateSystem
implements GridCoordSystem

A georeferencing "gridded" CoordinateSystem. This describes a "grid" of coordinates, which implies a connected topology such that values next to each other in index space are next to each other in coordinate space.

This currently assumes that the CoordinateSystem

1. is georeferencing (has Lat, Lon or GeoX, GeoY axes)
2. x, y are 1 or 2-dimensional axes.
3. rt, z, e are 1-dimensional axes.
4. t is 1 or 2 dimensional. if 2d, then rt exists

This is the common case for georeferencing coordinate systems. Mathematically it is a product set: {X,Y} x {Z} x {T}. The x and y axes may be 1 or 2 dimensional.

A CoordinateSystem may have multiple horizontal and vertical axes. GridCoordSys chooses one axis corresponding to X, Y, Z, and T. It gives preference to one dimensional axes (CoordinateAxis1D).

Nested Class Summary

Nested classes/interfaces inherited from class ucar.nc2.dataset.CoordinateSystem

CoordinateSystem.Builder<T extends CoordinateSystem.Builder<T>>

Field Summary

Fields inherited from class ucar.nc2.dataset.CoordinateSystem

aziAxis, coordAxes, coordTrans, dataType, domain, ds, elevAxis, ensAxis, hAxis, isImplicit, latAxis, lonAxis, name, pAxis, radialAxis, tAxis, xAxis, yAxis, zAxis

Constructor Summary

Constructors

Constructor and Description
GridCoordSys(CoordinateSystem cs, java.util.Formatter sbuff) Create a GridCoordSys from an existing Coordinate System.
GridCoordSys(GridCoordSys from, Range t_range, Range z_range, Range y_range, Range x_range) Create a GridCoordSys as a section of an existing GridCoordSys.
GridCoordSys(GridCoordSys from, Range rt_range, Range e_range, Range t_range, Range z_range, Range y_range, Range x_range) Create a GridCoordSys as a section of an existing GridCoordSys.

Method Summary

Modifier and Type	Method and Description
int	findTimeIndexFromDate(java.util.Date d) Deprecated. use CoordinateAxis1DTime.findTimeIndexFromDate
int[]	findXYCoordElement(double x_coord, double y_coord, int[] result) Deprecated. use findXYindexFromCoord
int[]	findXYindexFromCoord(double x_coord, double y_coord, int[] result) Given a point in x,y coordinate space, find the x,y index in the coordinate system.
int[]	findXYindexFromCoordBounded(double x_coord, double y_coord, int[] result) Given a point in x,y coordinate space, find the x,y index in the coordinate system.
int[]	findXYindexFromLatLon(double lat, double lon, int[] result) Given a lat,lon point, find the x,y index in the coordinate system.
int[]	findXYindexFromLatLonBounded(double lat, double lon, int[] result) Given a lat,lon point, find the x,y index in the coordinate system.
ProjectionRect	getBoundingBox() Get the x,y bounding box in projection coordinates.
CalendarDateRange	getCalendarDateRange()
java.util.List<CalendarDate>	getCalendarDates()
DateRange	getDateRange() Deprecated. use getCalendarDateRange
CoordinateAxis1D	getEnsembleAxis() get the Ensemble axis, else null
java.lang.String	getHorizStaggerType()
LatLonPoint	getLatLon(double xcoord, double ycoord)
LatLonPoint	getLatLon(int xindex, int yindex) Get the Lat/Lon coordinates of the midpoint of a grid cell, using the x,y indices
LatLonRect	getLatLonBoundingBox() Get horizontal bounding box in lat, lon coordinates.
java.util.List<Range>	getLatLonBoundingBox(LatLonRect rect) Deprecated. use getRangesFromLatLonRect.
static LatLonRect	getLatLonBoundingBox(Projection proj, double startx, double starty, double endx, double endy) Deprecated. use Projection.projToLatlonBB
int	getLevelIndex(java.lang.String name) Get the index corresponding to the level name.
java.lang.String	getLevelName(int index) Get the String name for the ith level(z) coordinate.
java.util.List<NamedObject>	getLevels() Deprecated. will move in ver 6
ProjectionImpl	getProjection() get the projection
java.util.List<Range>	getRangesFromLatLonRect(LatLonRect rect) Get Index Ranges for the given lat, lon bounding box.
CoordinateAxis1DTime	getRunTimeAxis() get the RunTime axis, else null
CoordinateAxis	getTimeAxis() get the Time axis
CoordinateAxis1DTime	getTimeAxis1D() get the Time axis, if its 1-dimensional
CoordinateAxis1DTime	getTimeAxisForRun(int run_index) Deprecated. doesnt work correctly for intervals
java.util.Date[]	getTimeDates() Deprecated. use getCalendarDates
int	getTimeIndex(java.lang.String name) Deprecated.
java.lang.String	getTimeName(int index) Deprecated.
java.util.List<NamedObject>	getTimes() Deprecated. will move in ver 6
CoordinateAxis1D	getVerticalAxis() get the Vertical axis (either Geoz, Height, or Pressure)
VerticalCT	getVerticalCT() Get the Coordinate Transform description.
VerticalTransform	getVerticalTransform() Get the vertical transform function, or null if none
CoordinateAxis	getXHorizAxis() get the X Horizontal axis (either GeoX or Lon)
CoordinateAxis	getYHorizAxis() get the Y Horizontal axis (either GeoY or Lat)
boolean	hasTimeAxis() True if there is a Time Axis.
boolean	hasTimeAxis1D() True if there is a Time Axis and it is 1D.
boolean	isGlobalLon() Is this a global coverage over longitude ?
static boolean	isGridCoordSys(java.util.Formatter sbuff, CoordinateSystem cs, VariableEnhanced ve) Determine if this CoordinateSystem can be made into a GridCoordSys.
boolean	isLatLon() is this a Lat/Lon coordinate system?
boolean	isRegularSpatial() true if x and y axes are CoordinateAxis1D and are regular
boolean	isZPositive() true if increasing z coordinate values means "up" in altitude
static GridCoordSys	makeGridCoordSys(java.util.Formatter sbuff, CoordinateSystem cs, VariableEnhanced v) Determine if the CoordinateSystem cs can be made into a GridCoordSys for the Variable v.
void	setHorizStaggerType(java.lang.String horizStaggerType)
void	setProjectionBoundingBox() Use the bounding box to set the defaule map are of the projection.
void	show(java.util.Formatter f, boolean showCoords)
java.lang.String	toString() String representation.

Methods inherited from class ucar.nc2.dataset.CoordinateSystem

addCoordinateTransform, addCoordinateTransforms, addLocalFieldsToBuilder, builder, containsAxes, containsAxis, containsAxisType, containsAxisTypes, containsDomain, countDomain, equals, findAxis, getAzimuthAxis, getCoordinateAxes, getCoordinateTransforms, getDomain, getElevationAxis, getHeightAxis, getLatAxis, getLonAxis, getName, getNetcdfDataset, getPressureAxis, getProjectionCT, getRadialAxis, getRankDomain, getRankRange, getTaxis, getXaxis, getYaxis, getZaxis, hashCode, hasVerticalAxis, isComplete, isCoordinateSystemFor, isGeoReferencing, isGeoXY, isImplicit, isProductSet, isRadial, isRegular, isSubset, isSubset, makeDomain, makeName, setImplicit, toBuilder

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ucar.nc2.dt.GridCoordSystem

getCoordinateAxes, getCoordinateTransforms, getDomain, getName, getProjectionCT, isProductSet

Constructor Detail

GridCoordSys

public GridCoordSys(CoordinateSystem cs,
                    java.util.Formatter sbuff)

Create a GridCoordSys from an existing Coordinate System. This will choose which axes are the XHoriz, YHoriz, Vertical, Time, RunTIme, Ensemble. If theres a Projection, it will set its map area

Parameters:

cs - create from this Coordinate System

sbuff - place information messages here, may be null

GridCoordSys

public GridCoordSys(GridCoordSys from,
                    Range t_range,
                    Range z_range,
                    Range y_range,
                    Range x_range)
             throws InvalidRangeException

Create a GridCoordSys as a section of an existing GridCoordSys. This will create sections of the corresponding CoordinateAxes.

Parameters:

from - copy this GridCoordSys

t_range - subset the time dimension, or null if you want all of it

z_range - subset the vertical dimension, or null if you want all of it

y_range - subset the y dimension, or null if you want all of it

x_range - subset the x dimension, or null if you want all of it

Throws:

InvalidRangeException - if any of the ranges are illegal

GridCoordSys

public GridCoordSys(GridCoordSys from,
                    Range rt_range,
                    Range e_range,
                    Range t_range,
                    Range z_range,
                    Range y_range,
                    Range x_range)
             throws InvalidRangeException

Create a GridCoordSys as a section of an existing GridCoordSys. This will create sections of the corresponding CoordinateAxes.

Parameters:

from - copy this GridCoordSys

rt_range - subset the runtime dimension, or null if you want all of it

e_range - subset the ensemble dimension, or null if you want all of it

t_range - subset the time dimension, or null if you want all of it

z_range - subset the vertical dimension, or null if you want all of it

y_range - subset the y dimension, or null if you want all of it

x_range - subset the x dimension, or null if you want all of it

Throws:

InvalidRangeException - if any of the ranges are illegal

Method Detail

isGridCoordSys

public static boolean isGridCoordSys(java.util.Formatter sbuff,
                                     CoordinateSystem cs,
                                     VariableEnhanced ve)

Determine if this CoordinateSystem can be made into a GridCoordSys. Optionally for a given variable. This currently assumes that the CoordinateSystem:

1. is georeferencing (cs.isGeoReferencing())
2. x, y are 1 or 2-dimensional axes.
3. z, t, if they exist, are 1-dimensional axes.
4. domain rank > 1

Parameters:

sbuff - place information messages here, may be null

cs - the CoordinateSystem to test

ve - can it be used for this variable; v may be null

Returns:

true if it can be made into a GridCoordSys.

See Also:

CoordinateSystem.isGeoReferencing()

makeGridCoordSys

public static GridCoordSys makeGridCoordSys(java.util.Formatter sbuff,
                                            CoordinateSystem cs,
                                            VariableEnhanced v)

Determine if the CoordinateSystem cs can be made into a GridCoordSys for the Variable v.

Parameters:

sbuff - put debug information into this StringBuffer; may be null.

cs - CoordinateSystem to check.

v - Variable to check.

Returns:

the GridCoordSys made from cs, else null.

getVerticalTransform

public VerticalTransform getVerticalTransform()

Get the vertical transform function, or null if none

Specified by:

getVerticalTransform in interface GridCoordSystem

Returns:

the vertical transform function, or null if none

getVerticalCT

public VerticalCT getVerticalCT()

Get the Coordinate Transform description.

Specified by:

getVerticalCT in interface GridCoordSystem

Returns:

Coordinate Transform description, or null if none

getXHorizAxis

public CoordinateAxis getXHorizAxis()

get the X Horizontal axis (either GeoX or Lon)

Specified by:

getXHorizAxis in interface GridCoordSystem

Returns:

X CoordinateAxis, may not be null.

getYHorizAxis

public CoordinateAxis getYHorizAxis()

get the Y Horizontal axis (either GeoY or Lat)

Specified by:

getYHorizAxis in interface GridCoordSystem

Returns:

Y CoordinateAxis, may not be null.

getVerticalAxis

public CoordinateAxis1D getVerticalAxis()

get the Vertical axis (either Geoz, Height, or Pressure)

Specified by:

getVerticalAxis in interface GridCoordSystem

Returns:

Y CoordinateAxis, may be null.

getTimeAxis

public CoordinateAxis getTimeAxis()

get the Time axis

Specified by:

getTimeAxis in interface GridCoordSystem

Returns:

the time coordinate axis, may be null.

getTimeAxis1D

public CoordinateAxis1DTime getTimeAxis1D()

get the Time axis, if its 1-dimensional

Specified by:

getTimeAxis1D in interface GridCoordSystem

Returns:

the time coordinate axis, may be null.

getRunTimeAxis

public CoordinateAxis1DTime getRunTimeAxis()

get the RunTime axis, else null

Specified by:

getRunTimeAxis in interface GridCoordSystem

Returns:

RunTime CoordinateAxis, may be null.

getEnsembleAxis

public CoordinateAxis1D getEnsembleAxis()

get the Ensemble axis, else null

Specified by:

getEnsembleAxis in interface GridCoordSystem

Overrides:

getEnsembleAxis in class CoordinateSystem

Returns:

axis of type AxisType.Ensemble, or null if none

getProjection

public ProjectionImpl getProjection()

get the projection

Specified by:

getProjection in interface GridCoordSystem

Overrides:

getProjection in class CoordinateSystem

Returns:

ProjectionImpl or null if none. TODO return Projection in ver6

setProjectionBoundingBox

public void setProjectionBoundingBox()

Description copied from interface: GridCoordSystem

Use the bounding box to set the defaule map are of the projection. This can be expensive if its a 2D coordinate system.

Specified by:

setProjectionBoundingBox in interface GridCoordSystem

isLatLon

public boolean isLatLon()

is this a Lat/Lon coordinate system?

Specified by:

isLatLon in interface GridCoordSystem

Overrides:

isLatLon in class CoordinateSystem

Returns:

true if it has Lat and Lon CoordinateAxis

isGlobalLon

public boolean isGlobalLon()

Is this a global coverage over longitude ?

Specified by:

isGlobalLon in interface GridCoordSystem

Returns:

true if isLatLon and longitude wraps

isZPositive

public boolean isZPositive()

true if increasing z coordinate values means "up" in altitude

Specified by:

isZPositive in interface GridCoordSystem

Returns:

true if increasing z coordinate values means "up" in altitude

isRegularSpatial

public boolean isRegularSpatial()

true if x and y axes are CoordinateAxis1D and are regular

Specified by:

isRegularSpatial in interface GridCoordSystem

Returns:

true if both X and Y axes are 1 dimensional and are regularly spaced.

getHorizStaggerType

public java.lang.String getHorizStaggerType()

Specified by:

getHorizStaggerType in interface GridCoordSystem

setHorizStaggerType

public void setHorizStaggerType(java.lang.String horizStaggerType)

findXYindexFromCoord

public int[] findXYindexFromCoord(double x_coord,
                                  double y_coord,
                                  int[] result)

Given a point in x,y coordinate space, find the x,y index in the coordinate system.

Specified by:

findXYindexFromCoord in interface GridCoordSystem

Parameters:

x_coord - position in x coordinate space.

y_coord - position in y coordinate space.

result - put result (x,y) index in here, may be null

Returns:

int[2], 0=x,1=y indices in the coordinate system of the point. These will be -1 if out of range.

findXYindexFromCoordBounded

public int[] findXYindexFromCoordBounded(double x_coord,
                                         double y_coord,
                                         int[] result)

Given a point in x,y coordinate space, find the x,y index in the coordinate system. If outside the range, the closest point is returned, eg, 0 or n-1 depending on if the coordinate is too small or too large.

Specified by:

findXYindexFromCoordBounded in interface GridCoordSystem

Parameters:

x_coord - position in x coordinate space.

y_coord - position in y coordinate space.

result - put result in here, may be null

Returns:

int[2], 0=x,1=y indices in the coordinate system of the point.

findXYindexFromLatLon

public int[] findXYindexFromLatLon(double lat,
                                   double lon,
                                   int[] result)

Given a lat,lon point, find the x,y index in the coordinate system.

Specified by:

findXYindexFromLatLon in interface GridCoordSystem

Parameters:

lat - latitude position.

lon - longitude position.

result - put result in here, may be null

Returns:

int[2], 0=x,1=y indices in the coordinate system of the point. These will be -1 if out of range.

findXYindexFromLatLonBounded

public int[] findXYindexFromLatLonBounded(double lat,
                                          double lon,
                                          int[] result)

Given a lat,lon point, find the x,y index in the coordinate system. If outside the range, the closest point is returned

Specified by:

findXYindexFromLatLonBounded in interface GridCoordSystem

Parameters:

lat - latitude position.

lon - longitude position.

result - put result in here, may be null

Returns:

int[2], 0=x,1=y indices in the coordinate system of the point.

hasTimeAxis

public boolean hasTimeAxis()

True if there is a Time Axis.

Specified by:

hasTimeAxis in interface GridCoordSystem

Overrides:

hasTimeAxis in class CoordinateSystem

Returns:

true if has Time axis

hasTimeAxis1D

public boolean hasTimeAxis1D()

True if there is a Time Axis and it is 1D.

Specified by:

hasTimeAxis1D in interface GridCoordSystem

Returns:

true if there is a Time Axis and it is 1D.

getTimeAxisForRun

public CoordinateAxis1DTime getTimeAxisForRun(int run_index)

Deprecated. doesnt work correctly for intervals

Description copied from interface: GridCoordSystem

This is the case of a 2D time axis, which depends on the run index. A time coordinate must be a udunit date or ISO String, so it can always be converted to a Date.

Specified by:

getTimeAxisForRun in interface GridCoordSystem

Parameters:

run_index - which run?

Returns:

1D time axis for that run. Null if not 2D time

getBoundingBox

public ProjectionRect getBoundingBox()

Get the x,y bounding box in projection coordinates.

Specified by:

getBoundingBox in interface GridCoordSystem

Returns:

ProjectionRect bounding box.

getLatLon

public LatLonPoint getLatLon(int xindex,
                             int yindex)

Get the Lat/Lon coordinates of the midpoint of a grid cell, using the x,y indices

Specified by:

getLatLon in interface GridCoordSystem

Parameters:

xindex - x index

yindex - y index

Returns:

lat/lon coordinate of the midpoint of the cell

getLatLon

public LatLonPoint getLatLon(double xcoord,
                             double ycoord)

getLatLonBoundingBox

public LatLonRect getLatLonBoundingBox()

Get horizontal bounding box in lat, lon coordinates.

Specified by:

getLatLonBoundingBox in interface GridCoordSystem

Returns:

lat, lon bounding box.

getLatLonBoundingBox

public java.util.List<Range> getLatLonBoundingBox(LatLonRect rect)
                                           throws InvalidRangeException

Deprecated. use getRangesFromLatLonRect.

Get Index Ranges for the given lat, lon bounding box.

Throws:

InvalidRangeException

getRangesFromLatLonRect

public java.util.List<Range> getRangesFromLatLonRect(LatLonRect rect)
                                              throws InvalidRangeException

Get Index Ranges for the given lat, lon bounding box. For projection, only an approximation based on latlon corners. Must have CoordinateAxis1D or 2D for x and y axis.

Specified by:

getRangesFromLatLonRect in interface GridCoordSystem

Parameters:

rect - the requested lat/lon bounding box

Returns:

list of 2 Range objects, first y then x.

Throws:

InvalidRangeException - if llbb generates bad ranges

toString

public java.lang.String toString()

String representation.

Overrides:

toString in class CoordinateSystem

show

public void show(java.util.Formatter f,
                 boolean showCoords)

Specified by:

show in interface GridCoordSystem

getCalendarDates

public java.util.List<CalendarDate> getCalendarDates()

Specified by:

getCalendarDates in interface GridCoordSystem

getCalendarDateRange

public CalendarDateRange getCalendarDateRange()

Specified by:

getCalendarDateRange in interface GridCoordSystem

getLevels

@Deprecated
public java.util.List<NamedObject> getLevels()

Deprecated. will move in ver 6

Get the list of level names, to be used for user selection. The ith one refers to the ith level coordinate.

Returns:

List of ucar.nc2.util.NamedObject, or empty list.

getLevelName

public java.lang.String getLevelName(int index)

Get the String name for the ith level(z) coordinate.

Parameters:

index - which level coordinate

Returns:

level name

getLevelIndex

public int getLevelIndex(java.lang.String name)

Get the index corresponding to the level name.

Parameters:

name - level name

Returns:

level index, or -1 if not found

getTimes

@Deprecated
public java.util.List<NamedObject> getTimes()

Deprecated. will move in ver 6

Get the list of time names, to be used for user selection. The ith one refers to the ith time coordinate.

Returns:

List of ucar.nc2.util.NamedObject, or empty list.

findXYCoordElement

public int[] findXYCoordElement(double x_coord,
                                double y_coord,
                                int[] result)

Deprecated. use findXYindexFromCoord

Given a point in x,y coordinate space, find the x,y index in the coordinate system.

getDateRange

public DateRange getDateRange()

Deprecated. use getCalendarDateRange

Get the date range

Specified by:

getDateRange in interface GridCoordSystem

Returns:

date range

getTimeDates

public java.util.Date[] getTimeDates()

Deprecated. use getCalendarDates

Get the list of times as Dates. If 2D, return list of unique dates.

Returns:

array of java.util.Date, or Date[0].

getTimeName

public java.lang.String getTimeName(int index)

Deprecated.

Get the string name for the ith time coordinate.

Parameters:

index - which time coordinate

Returns:

time name.

getTimeIndex

public int getTimeIndex(java.lang.String name)

Deprecated.

Get the index corresponding to the time name.

Parameters:

name - time name

Returns:

time index, or -1 if not found

findTimeIndexFromDate

public int findTimeIndexFromDate(java.util.Date d)

Deprecated. use CoordinateAxis1DTime.findTimeIndexFromDate

Only works if coordsys has 1d time axis

getLatLonBoundingBox

@Deprecated
public static LatLonRect getLatLonBoundingBox(Projection proj,
                                                          double startx,
                                                          double starty,
                                                          double endx,
                                                          double endy)

Deprecated. use Projection.projToLatlonBB