Java Virtual Machine (JVM) Settings

Setting $JAVA_OPTS

You will need to define and pass the following options and parameters to the Java Virtual Machine (JVM) in order to:

1. tell the TDS where to store configuration files; and
2. increase the amount of memory allocated to the JVM to enhance performance; and
3. add additional settings to the JVM to enable more advanced services in the TDS (e.g, WMS, etc).

Utilize Tomcat setenv.sh

The main control script for the Tomcat Servlet Container (${tomcat_home}/bin/catalina.sh) is executed on server startup and shutdown. When executed, the catalina.sh script will look for a setenv.sh file (or setenv.bat on Windows systems) in the ${tomcat_home}/bin directory. If it finds setenv.sh, it will apply the custom environment and JVM configurations specified within the file.

You can use the setenv.sh file to configure the JVM by setting by defining and populating the $JAVA_OPTS variable.

Example setenv.sh File

#!/bin/sh
#
# ENVARS for Tomcat
#
export CATALINA_HOME="/usr/local/tomcat"

export CATALINA_BASE="/usr/local/tomcat"

export JAVA_HOME="/usr/local/jdk"

# TDS specific ENVARS
#
# Define where the TDS content directory will live
# THIS IS CRITICAL and there is NO DEFAULT - 
# the TDS will not start without this.
#
CONTENT_ROOT=-Dtds.content.root.path=/data/content

# Set java prefs related variables (used by the wms service)
JAVA_PREFS_ROOTS="-Djava.util.prefs.systemRoot=$CONTENT_ROOT/thredds/javaUtilPrefs \
                  -Djava.util.prefs.userRoot=$CONTENT_ROOT/thredds/javaUtilPrefs"

#
# Some commonly used JAVA_OPTS settings:
#
NORMAL="-d64 -Xmx4096m -Xms512m -server -ea"
HEAP_DUMP="-XX:+HeapDumpOnOutOfMemoryError"
HEADLESS="-Djava.awt.headless=true"

#
# Standard setup.
#
JAVA_OPTS="$CONTENT_ROOT $NORMAL $HEAP_DUMP $HEADLESS $JAVA_PREFS_ROOTS"

export JAVA_OPTS

TDS $JAVA_OPTS Options

You will need to set the following JVM options for the TDS.

TDS Content Directory

All THREDDS Data Server configuration information is stored in the TDS content directory. This directory is created the first time the TDS is deployed to your server.

The location of this directory is chosen by you, the administrator. It is a good idea to locate this directory somewhere separate from ${tomcat_home} on your file system. It needs to be persisted between Tomcat upgrades or TDS re-deployments.

The location of TDS content directory is controlled by setting the tds.content.root.path Java system property using this syntax: -Dtds.content.root.path=path_to_TDS_content_root

Example Setting tds.content.root.path

-Dtds.content.root.path=/data/content/

There is no default location for this directory in the TDS; tds.content.root.path must be set, or the TDS will not start.

JVM Performance Options

Unidata recommends setting the following JVM options to promote better performance for the TDS.

• JVM initial allocated memory

  This is a number value (in bytes) for the initial size of the JVM heap. This value must be a multiple of 1024 and greater than 1 MB. Append the letter k or K to indicate kilobytes, m or M to indicate megabytes, g or G to indicate gigabytes.

  Enable the initial allocated memory with the Xms Java system property using this syntax: -Xms<size>

• JVM maximum allocated memory

  This is a number value (in bytes) for maximum size of the JVM memory allocation pool. Like the initial allocated memory (Xms), this value must be a multiple of 1024 and greater than 2 MB. Append the letter k or K to indicate kilobytes, m or M to indicate megabytes, g or G to indicate gigabytes.

  Enable the maximum allocated memory with the Xmx Java system property using this syntax: -Xmx<size>

  Important: Whenever possible, Unidata recommends at least -Xmx4096m (or more) for 64-bit operating systems.

• Java HotSpot server VM

  To improve performance, the JVM can be configured to run is server mode (for “server-class” machines) or in client mode (for Java clients).

  Configure the Hotspot compiler to run the JVM in server mode with the server Java system property using this syntax: -server

Example Setting JVM Performance Options

-Xmx4096m -Xms512m -server

JVM Options Needed For WMS Usage

The Web Map Service (WMS) is one of the data access services available in the TDS. If you intend to use this service, you’ll need to set the following options in the JVM.

• JVM headless mode

  The JVM needs to be run in headless mode to prevent graphics rendering code used in the WMS from assuming a graphics console exists in the server environment.
  (Application servers typically do not need peripherals, such as display devices). Without this, the WMS code will crash the server in some circumstances.

  Enabled headless mode with the java.awt.headless Java system property using this syntax: -Djava.awt.headless=true

• Java preferences

  The Java Preferences API facilities the systematic handling of Java program preference configurations, such as user settings. The TDS WMS code leverages this API to write system preferences to a location that is writable by the Tomcat user.

  This location is one of the uses for the aforementioned TDS content directory.

  Specify the java.util.prefs.systemRoot and java.util.prefs.userRoot Java system properties using this syntax: -Djava.util.prefs.systemRoot=path_to_TDS_content_root/thredds/javaUtilPrefs and -Djava.util.prefs.userRoot=path_to_TDS_content_root/thredds/javaUtilPrefs

  Note: The TDS stashes its configurations in a /thredds subdirectory of the TDS content directory.

Example Setting WMS JVM Options

-Djava.awt.headless=true \
-Djava.util.prefs.systemRoot=/data/content/thredds/javaUtilPrefs \
-Djava.util.prefs.userRoot=/data/content/thredds/javaUtilPrefs